miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|297761347|gb|FN888455.1|FN888455 GTCCGCTCCGGAGATAGCAGACCGTTCGAGCTCTTTAGATTCTACCTCGAATCAACCATGGCTGTCGCTTTCTCGAATGA
GAAGGCTATTACCGACTATTCGGAGCACCGCATCCGTCTGACCTTGACCTCCCAAAACGTTAAGCCGCTTGAGAAGGTCT
GCGCTCAGCTCATCGACGGAGCCAAGAACGAGCACCTTATTGTCAAGGGCCCAATCCGCATGCCGACCAAGGTGCTCCGC
ATCACCACCCGCAAGACCCCATGCGGAGAGGGATCCAAGACCTGGGATCGCTTCCAGATGCGCATCCACAAGCGTCACAT
CAACCTCCACGCTCCAGCTGAGGTCCTCCGCCAAATCACTTCGATCTCCATCGAGCCAGGAGTCGATATTGAGGTCACCA
GAGCCGACTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACC
TTGTTTGTTGCTGCTCCTATTGGTTTTGAAACTTAATGAATCATAATACAAACNNNNGCNCNNNNNNCNTTCNNTTCNNG
CNNGNNGCCTCTCTNTCNCCGTTGGTTTTGNNNCTTNNTGNNTCCTTNTCCAAACNNNNNNNNNNCNNNNNNNNNNTNNN
NNNNNNNNNNNNCCCNNCNCNNNNNNNNNCNNCNNNNCCTTCCCCCNTNNTCCCNCCCNNNTTCCNTNNNNNCNNNNNNN
NNTTCNTTTTNNCCCNNNNNNTNNNNNNCCCNNNCCCNTTNNNNNNTTNNNTTCTTCCCCCCCCCCNTTTNNNNCCCNNC
CNTTNNTNNNNNNNNNTTTTTCNNNNNCTT




Most similar to sp|P23403|RS20_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P23403|RS20_XENLA 40S ribosomal protein S20 OS=Xenopus laevis
           GN=rps20 PE=3 SV=1
          Length = 119

 Score =  168 bits (426), Expect = 4e-41
 Identities = 80/101 (79%), Positives = 93/101 (92%)
 Frame = +1

Query: 106 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 285
           HRIR+TLTS+NVK LEKVCA LI GAK ++L VKGP+RMPTK LRITTRKTPCGEGSKTW
Sbjct: 18  HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTW 77

Query: 286 DRFQMRIHKRHINLHAPAEVLRQITSISIEPGVDIEVTRAD 408
           DRFQMRIHKR I+LH+P+E+++QITSISIEPGV++EVT AD
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118